Bioinformatics Data Skills (2015)
Part I: Ideology: Data Skills for Robust and Reproducible Bioinformatics
Chapter 1: How to Learn Bioinformatics
Part II: Prerequisites: Essential Skills for Getting Started with a Bioinformatics Project
Chapter 2: Setting Up and Managing a Bioinformatics Project
Chapter 3: Remedial Unix Shell
Chapter 4: Working with Remote Machines
Chapter 6: Bioinformatics Data
Part III: All Practice: Bioinformatics Data Skills
Chapter 8: A Rapid Introduction to the R Language
Chapter 9: Working with Range Data
Chapter 10: Working with Sequence Data
Chapter 11: Working with Alignment Data
Chapter 12: Bioinformatics Shell Scripting, Writing Pipelines, and Parallelizing Tasks
Chapter 13: Out-of-Memory Approaches: Tabix and SQLite